HL_4D5L_019

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5L_019 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.1944

The information below is about HL_4V88_207

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_29031.1

Basepair signature

cWW-F-F

Number of instances in this motif group

35

Unit IDs

4D5L|1|1|C|994
4D5L|1|1|G|995
4D5L|1|1|A|996
4D5L|1|1|A|997
4D5L|1|1|A|998
4D5L|1|1|G|999

Current chains

Chain 1

18S RRNA 2

Nearby chains

Chain N

40S RIBOSOMAL PROTEIN US15

Chain a

40S RIBOSOMAL PROTEIN US2