HL_4D5L_028

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAGCGGUC

Length

8 nucleotides

Bulged bases

4D5L|1|1|C|1423, 4D5L|1|1|G|1424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5L|1|1|G|1420
4D5L|1|1|A|1421
4D5L|1|1|G|1422
4D5L|1|1|C|1423
4D5L|1|1|G|1424
4D5L|1|1|G|1425
4D5L|1|1|U|1426
4D5L|1|1|C|1427

Current chains

Chain 1

18S RRNA 2

Nearby chains

Chain Q

40S RIBOSOMAL PROTEIN US9

Chain T

40S RIBOSOMAL PROTEIN ES19