HL_4D5L_029
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GCGUUCAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5L_029 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.2742
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_87268.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
4D5L|1|1|G|1459
4D5L|1|1|C|1460
4D5L|1|1|G|1461
4D5L|1|1|U|1462
4D5L|1|1|U|1463
4D5L|1|1|C|1464
4D5L|1|1|A|1465
4D5L|1|1|G|1466
4D5L|1|1|C|1467
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain R
- 40S RIBOSOMAL PROTEIN ES17
- Chain g
- 40S RIBOSOMAL PROTEIN ES6
Coloring options: