HL_4D5L_031
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- AUUGCAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 4D5L|1|1|A|1623
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5L_031 not in the Motif Atlas
- Homologous match to HL_8P9A_222
- Geometric discrepancy: 0.5385
- The information below is about HL_8P9A_222
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67079.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4D5L|1|1|A|1614
4D5L|1|1|U|1615
4D5L|1|1|U|1616
4D5L|1|1|G|1617
4D5L|1|1|C|1618
4D5L|1|1|A|1619
4D5L|1|1|A|1620
4D5L|1|1|U|1621
4D5L|1|1|U|1622
4D5L|1|1|A|1623
4D5L|1|1|U|1624
4D5L|1|1|U|1625
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain P
- 40S RIBOSOMAL PROTEIN US19
- Chain S
- 40S RIBOSOMAL PROTEIN US13
- Chain T
- 40S RIBOSOMAL PROTEIN ES19
- Chain d
- 40S RIBOSOMAL PROTEIN US3
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