HL_4D5Y_001
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 4D5Y|1|2|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5Y_001 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.269
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
4D5Y|1|2|U|37
4D5Y|1|2|A|38
4D5Y|1|2|A|39
4D5Y|1|2|G|40
4D5Y|1|2|C|41
4D5Y|1|2|A|42
4D5Y|1|2|U|43
4D5Y|1|2|A|44
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain L
- 60S RIBOSOMAL PROTEIN EL13
- Chain N
- 60S RIBOSOMAL PROTEIN EL15
- Chain a
- 60S RIBOSOMAL PROTEIN UL15
- Chain o
- 60S RIBOSOMAL PROTEIN EL44
Coloring options: