HL_4D5Y_003
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5Y_003 not in the Motif Atlas
- Homologous match to HL_5TBW_003
- Geometric discrepancy: 0.1642
- The information below is about HL_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
4D5Y|1|2|C|89
4D5Y|1|2|G|90
4D5Y|1|2|G|91
4D5Y|1|2|C|92
4D5Y|1|2|G|93
4D5Y|1|2|A|94
4D5Y|1|2|G|95
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain L
- 60S RIBOSOMAL PROTEIN EL13
- Chain Q
- 60S RIBOSOMAL PROTEIN EL18
- Chain a
- 60S RIBOSOMAL PROTEIN UL15
- Chain o
- 60S RIBOSOMAL PROTEIN EL44
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