HL_4D5Y_004
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGCCCCGCGGGGCGCGG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5Y|1|2|C|126
4D5Y|1|2|G|127
4D5Y|1|2|C|128
4D5Y|1|2|C|129
4D5Y|1|2|C|130
4D5Y|1|2|C|131
4D5Y|1|2|G|132
4D5Y|1|2|C|133
4D5Y|1|2|G|134
4D5Y|1|2|G|135
4D5Y|1|2|G|136
4D5Y|1|2|G|137
4D5Y|1|2|C|138
4D5Y|1|2|G|139
4D5Y|1|2|C|140
4D5Y|1|2|G|141
4D5Y|1|2|G|142
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S RIBOSOMAL PROTEIN EL8
- Chain N
- 60S RIBOSOMAL PROTEIN EL15
- Chain X
- 60S RIBOSOMAL PROTEIN UL23
- Chain h
- 60S RIBOSOMAL PROTEIN UL29
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
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