HL_4D5Y_008

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCUUGGGAAUGC

Length

12 nucleotides

Bulged bases

4D5Y|1|2|A|286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|G|279
4D5Y|1|2|C|280
4D5Y|1|2|U|281
4D5Y|1|2|U|282
4D5Y|1|2|G|283
4D5Y|1|2|G|284
4D5Y|1|2|G|285
4D5Y|1|2|A|286
4D5Y|1|2|A|287
4D5Y|1|2|U|288
4D5Y|1|2|G|289
4D5Y|1|2|C|290

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain L

60S RIBOSOMAL PROTEIN EL13

Chain N

60S RIBOSOMAL PROTEIN EL15

Chain a

60S RIBOSOMAL PROTEIN UL15

Chain o

60S RIBOSOMAL PROTEIN EL44