HL_4D5Y_009
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 4D5Y|1|2|G|306
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5Y_009 not in the Motif Atlas
- Homologous match to HL_5TBW_009
- Geometric discrepancy: 0.263
- The information below is about HL_5TBW_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
4D5Y|1|2|G|305
4D5Y|1|2|G|306
4D5Y|1|2|U|307
4D5Y|1|2|A|308
4D5Y|1|2|A|309
4D5Y|1|2|A|310
4D5Y|1|2|C|311
4D5Y|1|2|U|312
4D5Y|1|2|C|313
4D5Y|1|2|C|314
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain L
- 60S RIBOSOMAL PROTEIN EL13
- Chain N
- 60S RIBOSOMAL PROTEIN EL15
- Chain a
- 60S RIBOSOMAL PROTEIN UL15
- Chain i
- 60S RIBOSOMAL PROTEIN EL36
- Chain o
- 60S RIBOSOMAL PROTEIN EL44
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