HL_4D5Y_010

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_010 not in the Motif Atlas

Homologous match to HL_5TBW_010

Geometric discrepancy: 0.1445

The information below is about HL_5TBW_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4D5Y|1|2|C|359
4D5Y|1|2|G|360
4D5Y|1|2|U|361
4D5Y|1|2|A|362
4D5Y|1|2|A|363
4D5Y|1|2|G|364

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN UL4

Chain j

60S RIBOSOMAL PROTEIN EL37

Chain l

60S RIBOSOMAL PROTEIN EL39