HL_4D5Y_028

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UAUAGACAGCACUGCCGAA

Length

19 nucleotides

Bulged bases

4D5Y|1|2|A|1938

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|U|1935
4D5Y|1|2|A|1936
4D5Y|1|2|U|1937
4D5Y|1|2|A|1938
4D5Y|1|2|G|1939
4D5Y|1|2|A|1940
4D5Y|1|2|C|1941
4D5Y|1|2|A|1942
4D5Y|1|2|G|1943
4D5Y|1|2|C|1944
4D5Y|1|2|A|1945
4D5Y|1|2|C|1997
4D5Y|1|2|U|1998
4D5Y|1|2|G|1999
4D5Y|1|2|C|2000
4D5Y|1|2|C|2001
4D5Y|1|2|G|2002
4D5Y|1|2|A|2003
4D5Y|1|2|A|2004

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain S

60S RIBOSOMAL PROTEIN EL20

Chain m

60S RIBOSOMAL PROTEIN EL40