HL_4D5Y_029

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGCGC

Length

5 nucleotides

Bulged bases

4D5Y|1|2|C|2065

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_029 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2397

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4D5Y|1|2|G|2063
4D5Y|1|2|G|2064
4D5Y|1|2|C|2065
4D5Y|1|2|G|2246
4D5Y|1|2|C|2247

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain C

60S RIBOSOMAL PROTEIN UL4

Chain F

60S RIBOSOMAL PROTEIN UL30

Chain Q

60S RIBOSOMAL PROTEIN EL18

Chain e

60S RIBOSOMAL PROTEIN EL32

Chain t

60S RIBOSOMAL PROTEIN EL28