HL_4D5Y_035

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

4D5Y|1|2|U|2507, 4D5Y|1|2|C|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.2228

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4D5Y|1|2|G|2500
4D5Y|1|2|U|2501
4D5Y|1|2|U|2502
4D5Y|1|2|C|2503
4D5Y|1|2|A|2504
4D5Y|1|2|G|2505
4D5Y|1|2|A|2506
4D5Y|1|2|U|2507
4D5Y|1|2|C|2508
4D5Y|1|2|C|2509

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain R

60S RIBOSOMAL PROTEIN UL19

Chain X

60S RIBOSOMAL PROTEIN UL23

Chain g

60S RIBOSOMAL PROTEIN EL34