HL_4D5Y_037

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_037 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.1794

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4D5Y|1|2|G|2555
4D5Y|1|2|G|2556
4D5Y|1|2|U|2557
4D5Y|1|2|A|2558
4D5Y|1|2|A|2559
4D5Y|1|2|C|2560

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain Z

60S RIBOSOMAL PROTEIN EL27

Chain g

60S RIBOSOMAL PROTEIN EL34