HL_4D5Y_044

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4D5Y|1|2|U|2851

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_044 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.171

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

4D5Y|1|2|C|2849
4D5Y|1|2|U|2850
4D5Y|1|2|U|2851
4D5Y|1|2|C|2852
4D5Y|1|2|G|2853
4D5Y|1|2|G|2854

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain n

60S RIBOSOMAL PROTEIN EL41

Chain p

60S RIBOSOMAL PROTEIN EL43