HL_4D5Y_055

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4D5Y|1|2|G|4155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D5Y_055 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.3979

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

4D5Y|1|2|C|4153
4D5Y|1|2|U|4154
4D5Y|1|2|G|4155
4D5Y|1|2|G|4156
4D5Y|1|2|G|4157
4D5Y|1|2|G|4158
4D5Y|1|2|C|4159
4D5Y|1|2|G|4160
4D5Y|1|2|G|4161

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain b

60S RIBOSOMAL PROTEIN EL29