HL_4D5Y_059

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UUCAGUACG

Length

9 nucleotides

Bulged bases

4D5Y|1|2|C|4263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|U|4261
4D5Y|1|2|U|4262
4D5Y|1|2|C|4263
4D5Y|1|2|A|4264
4D5Y|1|2|G|4265
4D5Y|1|2|U|4266
4D5Y|1|2|A|4267
4D5Y|1|2|C|4268
4D5Y|1|2|G|4269

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain Q

60S RIBOSOMAL PROTEIN EL18

Chain T

60S RIBOSOMAL PROTEIN EL21

Chain a

60S RIBOSOMAL PROTEIN UL15

Chain b

60S RIBOSOMAL PROTEIN EL29

Chain o

60S RIBOSOMAL PROTEIN EL44