HL_4D5Y_076
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCCGAUCUCGUCUGAUCUCGGAAG
- Length
- 24 nucleotides
- Bulged bases
- 4D5Y|1|4|C|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5Y|1|4|C|28
4D5Y|1|4|C|29
4D5Y|1|4|C|30
4D5Y|1|4|G|31
4D5Y|1|4|A|32
4D5Y|1|4|U|33
4D5Y|1|4|C|34
4D5Y|1|4|U|35
4D5Y|1|4|C|36
4D5Y|1|4|G|37
4D5Y|1|4|U|38
4D5Y|1|4|C|39
4D5Y|1|4|U|40
4D5Y|1|4|G|41
4D5Y|1|4|A|42
4D5Y|1|4|U|43
4D5Y|1|4|C|44
4D5Y|1|4|U|45
4D5Y|1|4|C|46
4D5Y|1|4|G|47
4D5Y|1|4|G|48
4D5Y|1|4|A|49
4D5Y|1|4|A|50
4D5Y|1|4|G|51
Current chains
- Chain 4
- 5S Ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 60S RIBOSOMAL PROTEIN UL18
- Chain J
- 60S RIBOSOMAL PROTEIN UL5
Coloring options: