HL_4D5Y_080

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGACUGUCCCCAGUGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D5Y|1|2|G|1153
4D5Y|1|2|G|1154
4D5Y|1|2|A|1155
4D5Y|1|2|C|1156
4D5Y|1|2|U|1157
4D5Y|1|2|G|1158
4D5Y|1|2|U|1159
4D5Y|1|2|C|1160
4D5Y|1|2|C|1161
4D5Y|1|2|C|1162
4D5Y|1|2|C|1163
4D5Y|1|2|A|1164
4D5Y|1|2|G|1165
4D5Y|1|2|U|1166
4D5Y|1|2|G|1167
4D5Y|1|2|C|1168

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain D

60S RIBOSOMAL PROTEIN UL18