HL_4D61_003
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUAAUUC
- Length
- 7 nucleotides
- Bulged bases
- 4D61|1|1|U|160, 4D61|1|1|U|161
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D61_003 not in the Motif Atlas
- Homologous match to HL_4V88_188
- Geometric discrepancy: 0.2635
- The information below is about HL_4V88_188
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
4D61|1|1|G|156
4D61|1|1|U|157
4D61|1|1|A|158
4D61|1|1|A|159
4D61|1|1|U|160
4D61|1|1|U|161
4D61|1|1|C|162
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain Y
- 40S RIBOSOMAL PROTEIN S24
- Chain i
- EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT ERF3A
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