HL_4D61_007
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUCGCCGUGCC
- Length
- 11 nucleotides
- Bulged bases
- 4D61|1|1|G|385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D61_007 not in the Motif Atlas
- Geometric match to HL_4WSM_226
- Geometric discrepancy: 0.3942
- The information below is about HL_4WSM_226
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22031.2
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4D61|1|1|G|377
4D61|1|1|U|378
4D61|1|1|C|379
4D61|1|1|G|380
4D61|1|1|C|381
4D61|1|1|C|382
4D61|1|1|G|383
4D61|1|1|U|384
4D61|1|1|G|385
4D61|1|1|C|386
4D61|1|1|C|387
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain I
- 40S RIBOSOMAL PROTEIN S8
- Chain L
- 40S RIBOSOMAL PROTEIN S11
Coloring options: