HL_4D61_009
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D61_009 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.2657
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4D61|1|1|C|441
4D61|1|1|C|442
4D61|1|1|U|443
4D61|1|1|G|444
4D61|1|1|A|445
4D61|1|1|G|446
4D61|1|1|A|447
4D61|1|1|A|448
4D61|1|1|A|449
4D61|1|1|C|450
4D61|1|1|G|451
4D61|1|1|G|452
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain I
- 40S RIBOSOMAL PROTEIN S8
- Chain Y
- 40S RIBOSOMAL PROTEIN S24
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