HL_4D61_016
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCCGAGCCG
- Length
- 9 nucleotides
- Bulged bases
- 4D61|1|1|C|834, 4D61|1|1|C|835, 4D61|1|1|A|837, 4D61|1|1|C|839, 4D61|1|1|C|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D61_016 not in the Motif Atlas
- Geometric match to HL_5TBW_006
- Geometric discrepancy: 0.3878
- The information below is about HL_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
4D61|1|1|C|833
4D61|1|1|C|834
4D61|1|1|C|835
4D61|1|1|G|836
4D61|1|1|A|837
4D61|1|1|G|838
4D61|1|1|C|839
4D61|1|1|C|840
4D61|1|1|G|841
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain J
- 40S RIBOSOMAL PROTEIN S9
- Chain Y
- 40S RIBOSOMAL PROTEIN S24
Coloring options: