HL_4D61_020
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 4D61|1|1|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D61_020 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.2356
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
4D61|1|1|G|1054
4D61|1|1|A|1055
4D61|1|1|U|1056
4D61|1|1|C|1057
4D61|1|1|A|1058
4D61|1|1|G|1059
4D61|1|1|A|1060
4D61|1|1|U|1061
4D61|1|1|A|1062
4D61|1|1|C|1063
4D61|1|1|C|1064
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain O
- 40S RIBOSOMAL PROTEIN S14
- Chain j
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
Coloring options: