HL_4D67_011

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGAAGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_011 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.3718

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53014.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

4D67|1|2|U|384
4D67|1|2|G|385
4D67|1|2|A|386
4D67|1|2|A|387
4D67|1|2|G|388
4D67|1|2|A|389

Current chains

Chain 2

28S RRNA

Nearby chains

Chain P

60S RIBOSOMAL PROTEIN L17