RNA 3D Hub //

4D67 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4D67_0011/2/37:44No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_4D67_0021/2/68:73No text annotation
geometric
HL_4O26_001
HL_35941.1
HL_4D67_0031/2/89:95No text annotation
homologous
HL_5TBW_003
NA
HL_4D67_0041/2/126:142No text annotation
HL_4D67_0781/2/201:208No text annotation
homologous
HL_8P9A_117
HL_01609.3
HL_4D67_0061/2/219:223No text annotation
homologous
HL_5TBW_006
NA
HL_4D67_0071/2/227:235T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_4D67_0791/2/280:289T-loop related
homologous
HL_8P9A_120
HL_77436.5
HL_4D67_0091/2/305:314Pseudoknot geometry
homologous
HL_5TBW_009
NA
HL_4D67_0101/2/359:364GNRA
homologous
HL_5TBW_010
NA
HL_4D67_0111/2/384:389No text annotation
geometric
HL_4O26_001
HL_35941.1
HL_4D67_0801/2/1153:1168No text annotation
HL_4D67_0131/2/1158:1163No text annotation
HL_4D67_0141/2/1297:1306T-loop with 2 stacked bulged bases
homologous
HL_5TBW_014
NA
HL_4D67_0811/2/1344:1353No text annotation
HL_4D67_0161/2/1369:1374GNRA
homologous
HL_5TBW_016
NA
HL_4D67_0171/2/1386:1391No text annotation
HL_4D67_0181/2/1416:1428No text annotation
HL_4D67_0851/2/1458:1465No text annotation
HL_4D67_0201/2/1540:1545No text annotation
geometric
HL_7RQB_011
NA
HL_4D67_0211/2/1572:1581No text annotation
homologous
HL_8P9A_132
HL_88205.2
HL_4D67_0221/2/1606:1614No text annotation
homologous
HL_8C3A_021
NA
HL_4D67_0231/2/1654:1659Externally structured
homologous
HL_8C3A_022
NA
HL_4D67_0241/2/1742:1748No text annotation
HL_4D67_0251/2/1795:1802No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_4D67_0261/2/1842:1848GNRA
homologous
HL_5TBW_025
NA
HL_4D67_0271/2/1864:1871No text annotation
homologous
HL_5TBW_026
NA
HL_4D67_0301/2/2293:2298GNRA
homologous
HL_5TBW_030
NA
HL_4D67_0311/2/2353:2361T-loop with 2 stacked bulged bases
homologous
HL_5TBW_031
NA
HL_4D67_0861/2/2397:2403No text annotation
homologous
HL_8P9A_144
HL_57176.2
HL_4D67_0331/2/2435:2440GNRA variation
homologous
HL_5TBW_033
NA
HL_4D67_0871/2/2464:2468Mini UNCG
geometric
HL_4LFB_005
HL_48778.2
HL_4D67_0351/2/2500:2509No text annotation
homologous
HL_5TBW_035
NA
HL_4D67_0361/2/2537:2544No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_4D67_0371/2/2555:2560GNRA
homologous
HL_5TBW_036
NA
HL_4D67_0381/2/2601:2609No text annotation
homologous
HL_5TBW_037
NA
HL_4D67_0391/2/2641:2647No text annotation
homologous
HL_8C3A_038
NA
HL_4D67_0401/2/2681:2689No text annotation
HL_4D67_0411/2/2715:2719No text annotation
homologous
HL_8C3A_040
NA
HL_4D67_0421/2/2769:2776No text annotation
homologous
HL_5TBW_041
NA
HL_4D67_0431/2/2787:2793GNRA
homologous
HL_5TBW_042
NA
HL_4D67_0441/2/2849:2854UNCG
homologous
HL_8C3A_043
NA
HL_4D67_0461/2/3583:3587No text annotation
homologous
HL_5TBW_045
NA
HL_4D67_0471/2/3608:3618No text annotation
homologous
HL_5TBW_046
NA
HL_4D67_0481/2/3637:3643GNRA
homologous
HL_5TBW_047
NA
HL_4D67_0491/2/3693:3698GNRA
homologous
HL_8C3A_048
NA
HL_4D67_0501/2/3726:3736No text annotation
homologous
HL_5TBW_049
NA
HL_4D67_0511/2/3765:3773No text annotation
homologous
HL_5TBW_050
NA
HL_4D67_0521/2/3842:3851No text annotation
homologous
HL_8C3A_051
NA
HL_4D67_0881/2/4070:4074No text annotation
HL_4D67_0541/2/4102:4109No text annotation
HL_4D67_0551/2/4153:4161No text annotation
homologous
HL_8C3A_055
NA
HL_4D67_0561/2/4170:4182No text annotation
homologous
HL_5TBW_055
NA
HL_4D67_0571/2/4210:4218No text annotation
homologous
HL_5TBW_056
NA
HL_4D67_0581/2/4230:4237Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_4D67_0591/2/4261:4269No text annotation
HL_4D67_0821/2/4281:4286GNRA
homologous
HL_8P9A_170
HL_37824.8
HL_4D67_0611/2/4312:4322No text annotation
geometric
HL_4V83_139
NA
HL_4D67_0621/2/4377:4385No text annotation
homologous
HL_5TBW_061
NA
HL_4D67_0891/2/4434:4441No text annotation
homologous
HL_8P9A_173
HL_31585.4
HL_4D67_0641/2/4457:4463No text annotation
geometric
HL_5TBW_063
NA
HL_4D67_0651/2/4500:4505GNRA
homologous
HL_5TBW_064
NA
HL_4D67_0661/2/4563:4568GNRA
homologous
HL_5TBW_065
NA
HL_4D67_0671/2/4606:4611Ribsomal LSU H95
homologous
HL_5TBW_066
NA
HL_4D67_0681/2/4648:4662No text annotation
homologous
HL_5TBW_067
NA
HL_4D67_0691/2/4862:4869No text annotation
HL_4D67_0701/2/4930:4938No text annotation
homologous
HL_8C3A_071
NA
HL_4D67_0901/2/4976:4983No text annotation
geometric
HL_8P9A_179
HL_08100.1
HL_4D67_0721/3/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_93438.2
HL_4D67_0731/3/69:88No text annotation
homologous
HL_8C3A_230
NA
HL_4D67_0741/3/108:111No text annotation
geometric
HL_8C3A_054
NA
HL_4D67_0751/3/122:128No text annotation
HL_4D67_0761/4/28:51No text annotation
HL_4D67_0771/4/86:91GNRA
homologous
HL_5TBW_186
NA

Problematic loops

#loop idProblemSequence
HL_4D67_005No text annotation
HL_4D67_008No text annotation
HL_4D67_012No text annotation
HL_4D67_015No text annotation
HL_4D67_019No text annotation
HL_4D67_028No text annotation
HL_4D67_029No text annotation
HL_4D67_032No text annotation
HL_4D67_034No text annotation
HL_4D67_045No text annotation
HL_4D67_053No text annotation
HL_4D67_060GNRA with extra cWW
HL_4D67_063No text annotation
HL_4D67_083No text annotation
HL_4D67_071No text annotation
HL_4D67_084No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4D67_0011/2/2:11,
1/3/145:155		No text annotation
IL_4D67_2081/2/4:18,
1/3/139:153		No text annotation
IL_4D67_0021/2/11:16,
1/3/141:145		Other IL
geometric
IL_4WF9_084
NA
IL_4D67_0031/2/16:19,
1/3/138:141		Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_4D67_1601/2/31:37,
1/2/44:51		8x7 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_006
IL_04346.10
IL_4D67_0051/2/81:88,
1/2/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_4D67_2091/2/164:179,
1/2/249:259		No text annotation
IL_4D67_0061/2/177:179,
1/2/249:250		Minor groove platform
geometric
IL_7A0S_028
IL_51454.3
IL_4D67_2101/2/181:189,
1/2/246:247		No text annotation
IL_4D67_0081/2/339:341,
1/3/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_4D67_0091/2/378:382,
1/2/390:405		No text annotation
IL_4D67_1631/2/378:384,
1/2/389:405		No text annotation
IL_4D67_0101/2/382:384,
1/2/389:390		Single stack bend
geometric
IL_5TBW_070
NA
IL_4D67_0111/2/406:412,
1/3/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_4D67_0121/2/433:437,
1/2/1280:1285		No text annotation
IL_4D67_0131/2/450:452,
1/2/683:685		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
IL_87907.2
IL_4D67_2111/2/455:465,
1/2/672:680		No text annotation
IL_4D67_2121/2/471:478,
1/2/665:666		No text annotation
IL_4D67_0161/2/482:484,
1/2/660:661		No text annotation
IL_4D67_2131/2/487:489,
1/2/655:657		No text annotation
IL_4D67_0181/2/491:493,
1/2/651:653		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_4D67_0191/2/496:498,
1/2/646:648		Isolated non-canonical cWW pair
geometric
IL_4YHW_001
IL_87907.2
IL_4D67_1661/2/501:503,
1/2/640:643		No text annotation
IL_4D67_2141/2/708:717,
1/2/921:932		No text annotation
IL_4D67_0211/2/710:712,
1/2/926:930		No text annotation
IL_4D67_0221/2/714:717,
1/2/921:924		Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_85033.2
IL_4D67_0231/2/718:725,
1/2/911:920		No text annotation
IL_4D67_0241/2/728:730,
1/2/906:908		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_4D67_0251/2/733:737,
1/2/900:903		No text annotation
IL_4D67_1691/2/739:740,
1/2/895:898		Multiple bulged bases
geometric
IL_7Q80_001
IL_84476.1
IL_4D67_0271/2/955:956,
1/2/1257:1259		Multiple bulged bases
geometric
IL_7Q80_001
IL_84476.1
IL_4D67_0281/2/958:962,
1/2/1252:1255		No text annotation
IL_4D67_0291/2/1057:1062,
1/2/1198:1203		No text annotation
IL_4D67_0301/2/1063:1064,
1/2/1193:1197		Multiple bulged bases
geometric
IL_1R3E_001
IL_84476.1
IL_4D67_0311/2/1064:1067,
1/2/1189:1193		No text annotation
IL_4D67_0321/2/1077:1078,
1/2/1177:1179		No text annotation
IL_4D67_0331/2/1092:1095,
1/2/1138:1141		Tandem non-canonical cWW pairs
geometric
IL_1L9A_005
IL_85033.2
IL_4D67_0341/2/1153:1155,
1/2/1166:1168		Isolated non-canonical cWW pair
geometric
IL_5TBW_127
NA
IL_4D67_0351/2/1223:1225,
1/2/1245:1246		No text annotation
IL_4D67_2151/2/1338:1341,
1/2/1356:1361		No text annotation
IL_4D67_1731/2/1405:1408,
1/2/1436:1439		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_4D67_0381/2/1411:1414,
1/2/1430:1433		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_4D67_0391/2/1446:1447,
1/2/1475:1477		Single bulged A
homologous
IL_8C3A_026
NA
IL_4D67_0401/2/1453:1455,
1/2/1468:1469		Minor groove platform
geometric
IL_7A0S_076
IL_51454.3
IL_4D67_0411/2/1499:1501,
1/2/1634:1636		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_4D67_1751/2/1499:1505,
1/2/1627:1636		No text annotation
IL_4D67_0421/2/1501:1505,
1/2/1627:1634		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_4D67_0431/2/1529:1534,
1/2/1551:1557		No text annotation
geometric
IL_4V88_462
NA
IL_4D67_0441/2/1565:1568,
1/2/1584:1586		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_4D67_0451/2/1569:1571,
1/2/1582:1583		Single bulged U
homologous
IL_5TBW_032
NA
IL_4D67_0461/2/1603:1605,
1/2/1615:1619		No text annotation
homologous
IL_8C3A_036
NA
IL_4D67_0471/2/1650:1652,
1/2/1661:1663		Isolated non-canonical cWW pair
homologous
IL_5TBW_034
NA
IL_4D67_0481/2/1665:1667,
1/2/1826:1829		No text annotation
IL_4D67_0501/2/1702:1704,
1/2/1816:1817		Single bulged G
homologous
IL_8C3A_040
NA
IL_4D67_0511/2/1710:1716,
1/2/1771:1777		No text annotation
homologous
IL_8C3A_041
NA
IL_4D67_1771/2/1710:1717,
1/2/1769:1777		No text annotation
IL_4D67_0521/2/1716:1717,
1/2/1769:1771		Minor groove platform
homologous
IL_5TBW_039
NA
IL_4D67_2161/2/1718:1723,
1/2/1765:1768		No text annotation
homologous
IL_8P9A_268
IL_26222.2
IL_4D67_0541/2/1725:1728,
1/2/1760:1763		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_77658.1
IL_4D67_1781/2/1728:1730,
1/2/1758:1760		Isolated non-canonical cWW pair
homologous
IL_8P9A_270
IL_87907.2
IL_4D67_0561/2/1732:1736,
1/2/1754:1756		No text annotation
geometric
IL_4V84_070
NA
IL_4D67_1791/2/1736:1742,
1/2/1748:1754		No text annotation
IL_4D67_0571/2/1738:1742,
1/2/1748:1752		No text annotation
IL_4D67_0581/2/1793:1795,
1/2/1802:1803		Single bulged A
homologous
IL_5TBW_045
NA
IL_4D67_1801/2/1836:1838,
1/2/1852:1854		Isolated non-canonical cWW pair
homologous
IL_8P9A_274
IL_87907.2
IL_4D67_0601/2/1883:1887,
1/2/2045:2049		UAA/GAN
homologous
IL_8C3A_051
NA
IL_4D67_0611/2/1889:1898,
1/2/2041:2043		Isolated non-canonical cWW pair
geometric
IL_5Y85_006
IL_87907.2
IL_4D67_0621/2/1898:1900,
1/2/2040:2041		Multiple bulged bases
geometric
IL_7Q80_003
IL_84476.1
IL_4D67_0631/2/1904:1911,
1/2/2031:2036		No text annotation
homologous
IL_5TBW_051
NA
IL_4D67_0641/2/1911:1922,
1/2/2016:2031		No text annotation
geometric
IL_5TBW_052
NA
IL_4D67_0651/2/1924:1926,
1/2/2013:2014		Single bulged U
homologous
IL_8C3A_056
NA
IL_4D67_0661/2/2060:2063,
1/2/2247:2250		Tandem non-canonical cWW pairs
geometric
IL_1MFQ_004
IL_85033.2
IL_4D67_0671/2/2266:2268,
1/2/2319:2322		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_4D67_1821/2/2275:2277,
1/2/2311:2312		Single bulged A
homologous
IL_8C3A_062
NA
IL_4D67_2171/2/2278:2285,
1/2/2305:2310		No text annotation
IL_4D67_0701/2/2288:2290,
1/2/2301:2302		Single bulged A
geometric
IL_4R4V_004
IL_31462.7
IL_4D67_0711/2/2335:2342,
1/2/3826:3832		8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
geometric
IL_4V9F_012
IL_59724.1
IL_4D67_0721/2/2383:2386,
1/2/2760:2761		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_50694.7
IL_4D67_0731/2/2392:2396,
1/2/2404:2406		C-loop
geometric
IL_7RQB_051
NA
IL_4D67_0741/2/2423:2427,
1/2/2486:2491		UAA/GAN
homologous
IL_8C3A_067
NA
IL_4D67_0751/2/2454:2456,
1/2/2476:2477		No text annotation
IL_4D67_0761/2/2519:2521,
1/2/2749:2751		Isolated cWH basepair
geometric
IL_3SJ2_003
IL_10167.6
IL_4D67_0771/2/2523:2526,
1/2/2745:2747		Isolated non-canonical cWW pair
geometric
IL_7A0S_107
IL_07785.1
IL_4D67_0781/2/2566:2570,
1/2/2729:2733		Triple sheared
geometric
IL_5TBW_067
NA
IL_4D67_0791/2/2590:2591,
1/2/2701:2703		Single bulged A
geometric
IL_4L8H_001
IL_31462.7
IL_4D67_0801/2/2591:2592,
1/2/2699:2701		Single stack bend
homologous
IL_8C3A_076
NA
IL_4D67_0811/2/2622:2625,
1/2/2662:2666		No text annotation
IL_4D67_0821/2/2628:2630,
1/2/2658:2659		Minor groove platform
geometric
IL_7A0S_076
IL_51454.3
IL_4D67_2181/2/2633:2639,
1/2/2649:2655		No text annotation
IL_4D67_0841/2/2809:2815,
1/2/3819:3822		No text annotation
homologous
IL_5TBW_074
NA
IL_4D67_0851/2/2821:2823,
1/2/3811:3813		Isolated tWW turn
homologous
IL_5TBW_075
NA
IL_4D67_0861/2/2824:2827,
1/2/3809:3810		Major groove platform; stack outside cWW
homologous
IL_8C3A_082
NA
IL_4D67_1881/2/2824:2832,
1/2/3806:3810		No text annotation
homologous
IL_8P9A_305
IL_22854.4
IL_4D67_0871/2/2827:2832,
1/2/3806:3809		Intercalated tWH
geometric
IL_5TBW_077
NA
IL_4D67_0881/2/2844:2849,
1/2/2854:2860		No text annotation
homologous
IL_8C3A_084
NA
IL_4D67_0891/2/2866:2868,
1/2/3579:3581		Isolated non-canonical cWW pair
homologous
IL_5TBW_079
NA
IL_4D67_0901/2/2873:2874,
1/2/3571:3574		No text annotation
homologous
IL_5TBW_080
NA
IL_4D67_0911/2/3601:3602,
1/2/3796:3798		Single bulged A
homologous
IL_5TBW_082
NA
IL_4D67_0921/2/3629:3634,
1/2/3646:3653		Kink-turn related
homologous
IL_5TBW_083
NA
IL_4D67_0931/2/3669:3672,
1/2/3718:3719		Major groove intercalation
homologous
IL_5TBW_084
NA
IL_4D67_0941/2/3673:3674,
1/2/3714:3717		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_4D67_0951/2/3677:3679,
1/2/3710:3711		No text annotation
IL_4D67_0961/2/3679:3683,
1/2/3708:3710		No text annotation
IL_4D67_0971/2/3684:3690,
1/2/3701:3707		No text annotation
homologous
IL_5TBW_088
NA
IL_4D67_0981/2/3723:3724,
1/2/3738:3740		Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_4D67_0991/2/3749:3750,
1/2/3780:3783		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_4D67_1001/2/3750:3761,
1/2/3777:3780		No text annotation
homologous
IL_5TBW_090
NA
IL_4D67_1011/2/3864:3867,
1/2/4523:4525		No text annotation
homologous
IL_8C3A_096
NA
IL_4D67_1021/2/3869:3871,
1/2/4518:4521		Major groove platform with intercalation
homologous
IL_5TBW_092
NA
IL_4D67_1891/2/3882:3884,
1/2/4348:4349		Single bulged U
homologous
IL_8P9A_321
IL_89505.4
IL_4D67_1041/2/3885:3886,
1/2/4344:4347		Minor groove platform
geometric
IL_5TBW_094
NA
IL_4D67_1901/2/3896:3898,
1/2/4141:4144		No text annotation
homologous
IL_8P9A_323
IL_85599.2
IL_4D67_1061/2/3917:3919,
1/2/4030:4033		No text annotation
IL_4D67_2191/2/3917:3921,
1/2/4028:4033		No text annotation
IL_4D67_1071/2/3919:3921,
1/2/4028:4030		Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_87907.2
IL_4D67_1081/2/3923:3935,
1/2/4023:4026		No text annotation
IL_4D67_1091/2/3939:3942,
1/2/4006:4019		No text annotation
geometric
IL_1MZP_003
IL_75283.2
IL_4D67_1101/2/4050:4059,
1/2/4118:4124		No text annotation
IL_4D67_1111/2/4151:4152,
1/2/4162:4164		Single bulged A
homologous
IL_8C3A_107
NA
IL_4D67_1121/2/4203:4205,
1/2/4223:4227		Isolated tHS basepair with bulges
homologous
IL_5TBW_099
NA
IL_4D67_1131/2/4255:4258,
1/2/4272:4275		Tandem non-canonical cWW pairs
homologous
IL_8C3A_109
NA
IL_4D67_1141/2/4307:4310,
1/2/4324:4325		Single stack bend
geometric
IL_4V83_236
IL_90729.1
IL_4D67_1151/2/4360:4361,
1/2/4402:4404		Major groove platform
homologous
IL_5TBW_102
NA
IL_4D67_1161/2/4361:4363,
1/2/4400:4402		Isolated non-canonical cWW pair
geometric
IL_5TBW_021
NA
IL_4D67_1171/2/4363:4365,
1/2/4399:4400		Major groove platform
geometric
IL_5TBW_104
NA
IL_4D67_1181/2/4365:4367,
1/2/4395:4399		Major groove minor groove platform with extra cWW
homologous
IL_8C3A_113
NA
IL_4D67_1191/2/4372:4376,
1/2/4386:4390		No text annotation
homologous
IL_8C3A_114
NA
IL_4D67_1201/2/4413:4414,
1/2/4486:4488		Major groove platform
homologous
IL_5TBW_107
NA
IL_4D67_1211/2/4416:4418,
1/2/4480:4484		No text annotation
homologous
IL_8C3A_116
NA
IL_4D67_1941/2/4416:4419,
1/2/4477:4484		No text annotation
IL_4D67_1221/2/4418:4419,
1/2/4477:4480		Multiple bulged bases
geometric
IL_5TBW_109
NA
IL_4D67_1231/2/4426:4428,
1/2/4449:4451		Isolated non-canonical cWW pair
homologous
IL_8C3A_118
NA
IL_4D67_1241/2/4428:4430,
1/2/4445:4449		No text annotation
geometric
IL_3DD2_004
IL_55516.2
IL_4D67_1251/2/4455:4457,
1/2/4463:4465		Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_4D67_1951/2/4497:4498,
1/2/4507:4509		Single bulged A
geometric
IL_6WPI_001
IL_31462.7
IL_4D67_1271/2/4540:4545,
1/2/4677:4682		No text annotation
IL_4D67_1281/2/4556:4563,
1/2/4568:4574		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_4D67_2201/2/4584:4589,
1/2/4629:4633		No text annotation
IL_4D67_1301/2/4592:4597,
1/2/4622:4626		UAA/GAN related
homologous
IL_5TBW_118
NA
IL_4D67_1311/2/4597:4600,
1/2/4619:4622		Tandem non-canonical cWW pairs
geometric
IL_4WF9_109
NA
IL_4D67_1981/2/4598:4602,
1/2/4615:4621		No text annotation
IL_4D67_1321/2/4600:4602,
1/2/4615:4619		Isolated cWS basepair
geometric
IL_5TBW_047
NA
IL_4D67_1991/2/4641:4645,
1/2/4665:4669		UAA/GAN
homologous
IL_8P9A_348
IL_38507.2
IL_4D67_2001/2/4699:4701,
1/2/4913:4914		Minor groove platform
geometric
IL_7A0S_076
IL_51454.3
IL_4D67_1351/2/4702:4705,
1/2/4909:4912		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_4D67_2011/2/4715:4725,
1/2/4823:4832		No text annotation
IL_4D67_1361/2/4728:4730,
1/2/4818:4820		Isolated non-canonical cWW pair
geometric
IL_4V9F_105
IL_87907.2
IL_4D67_2211/2/4733:4736,
1/2/4811:4815		No text annotation
IL_4D67_1381/2/4739:4744,
1/2/4806:4808		No text annotation
IL_4D67_2031/2/4746:4747,
1/2/4802:4804		Multiple bulged bases
geometric
IL_6JXM_001
IL_84476.1
IL_4D67_2041/2/4840:4843,
1/2/4886:4889		No text annotation
geometric
IL_7LYF_005
NA
IL_4D67_1411/2/4846:4851,
1/2/4879:4883		No text annotation
IL_4D67_1421/2/4854:4856,
1/2/4875:4876		Minor groove platform
geometric
IL_4V9F_075
IL_51454.3
IL_4D67_1431/2/4923:4924,
1/2/5018:5020		Single bulged G
geometric
IL_3SUX_001
IL_00225.14
IL_4D67_1441/2/4927:4930,
1/2/4938:4941		Tandem non-canonical cWW pairs
homologous
IL_5TBW_129
NA
IL_4D67_1451/2/4947:4949,
1/2/5012:5014		No text annotation
geometric
IL_3LA5_001
NA
IL_4D67_1461/2/4951:4952,
1/2/5008:5010		Single bulged U
homologous
IL_5TBW_131
NA
IL_4D67_2051/2/4955:4957,
1/2/5000:5005		No text annotation
homologous
IL_8C3A_138
NA
IL_4D67_1481/2/4958:4964,
1/2/4994:4999		No text annotation
IL_4D67_1491/2/4967:4969,
1/2/4990:4991		Single bulged U
homologous
IL_8C3A_140
NA
IL_4D67_1501/2/4969:4972,
1/2/4987:4990		Double sheared; A in syn
homologous
IL_5TBW_135
NA
IL_4D67_2061/3/64:66,
1/3/92:95		No text annotation
homologous
IL_8P9A_371
IL_07785.1
IL_4D67_1521/3/68:69,
1/3/88:90		Single bulged U
homologous
IL_5TBW_146
NA
IL_4D67_1531/4/1:2,
1/4/117:119		Single stack bend
geometric
IL_2QWY_008
IL_90729.1
IL_4D67_1541/4/15:16,
1/4/62:64		Multiple bulged bases
geometric
IL_8C3A_142
NA
IL_4D67_1551/4/21:27,
1/4/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_4D67_1561/4/72:78,
1/4/98:103		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_4WF9_100
IL_16458.4
IL_4D67_1571/4/79:81,
1/4/95:97		Isolated cWH basepair
geometric
IL_4WZM_001
NA
IL_4D67_1581/4/82:85,
1/4/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA

Problematic loops

#loop idProblemSequence
IL_4D67_159No text annotation
IL_4D67_0049x8 Sarcin-Ricin; G-bulge
IL_4D67_161No text annotation
IL_4D67_007Isolated non-canonical cWW pair
IL_4D67_162Isolated non-canonical cWW pair
IL_4D67_014No text annotation
IL_4D67_164No text annotation
IL_4D67_165Isolated non-canonical cWW pair
IL_4D67_015No text annotation
IL_4D67_017No text annotation
IL_4D67_020No text annotation
IL_4D67_167No text annotation
IL_4D67_168No text annotation
IL_4D67_026Tandem non-canonical cWW pairs
IL_4D67_170Isolated non-canonical cWW pair
IL_4D67_171Isolated non-canonical cWW pair
IL_4D67_172No text annotation
IL_4D67_036No text annotation
IL_4D67_037No text annotation
IL_4D67_174No text annotation
IL_4D67_176Triple sheared with non-canonical cWW
IL_4D67_049Multiple bulged bases
IL_4D67_053No text annotation
IL_4D67_055Tandem non-canonical cWW pairs
IL_4D67_059Tandem non-canonical cWW pairs
IL_4D67_181Partly complementary
IL_4D67_068Isolated non-canonical cWW pair
IL_4D67_069No text annotation
IL_4D67_183No text annotation
IL_4D67_184No text annotation
IL_4D67_185Partly complementary
IL_4D67_186No text annotation
IL_4D67_187No text annotation
IL_4D67_083No text annotation
IL_4D67_103Isolated non-canonical cWW pair
IL_4D67_105No text annotation
IL_4D67_191No text annotation
IL_4D67_192No text annotation
IL_4D67_193No text annotation
IL_4D67_126No text annotation
IL_4D67_196No text annotation
IL_4D67_129No text annotation
IL_4D67_197No text annotation
IL_4D67_133UAA/GAN with extra cWW
IL_4D67_134No text annotation
IL_4D67_202Tandem non-canonical cWW pairs
IL_4D67_137No text annotation
IL_4D67_139Isolated non-canonical cWW pair
IL_4D67_140No text annotation
IL_4D67_147No text annotation
IL_4D67_151No text annotation
IL_4D67_207No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4D67_0171/2/342:358,
1/2/365:370,
1/3/21:24		No text annotation
homologous
J3_8P9A_045
J3_30040.2
J3_4D67_0011/2/371:378,
1/2/405:406,
1/3/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_4D67_0351/2/371:378,
1/2/405:412,
1/3/13:20		No text annotation
J3_4D67_0361/2/371:384,
1/2/389:412,
1/3/13:20		No text annotation
J3_4D67_0371/2/433:446,
1/2/689:692,
1/2/1273:1285		No text annotation
J3_4D67_0381/2/697:701,
1/2/939:956,
1/2/1257:1268		No text annotation
J3_4D67_0221/2/958:969,
1/2/1215:1225,
1/2/1245:1255		No text annotation
J3_4D67_0021/2/963:969,
1/2/1215:1223,
1/2/1246:1251		No text annotation
J3_4D67_0031/2/970:977,
1/2/1052:1057,
1/2/1203:1214		No text annotation
J3_4D67_0391/2/971:975,
1/2/1054:1059,
1/2/1201:1213		No text annotation
J3_4D67_0401/2/1081:1088,
1/2/1145:1148,
1/2/1173:1174		No text annotation
J3_4D67_0051/2/1510:1516,
1/2/1601:1603,
1/2/1619:1622		No text annotation
homologous
J3_8C3A_003
NA
J3_4D67_0061/2/1524:1527,
1/2/1559:1563,
1/2/1588:1593		No text annotation
homologous
J3_5TBW_005
NA
J3_4D67_0411/2/1705:1706,
1/2/1781:1786,
1/2/1810:1815		No text annotation
J3_4D67_0071/2/2370:2376,
1/2/2782:2784,
1/2/2796:2799		No text annotation
homologous
J3_5TBW_008
NA
J3_4D67_0081/2/2379:2382,
1/2/2762:2768,
1/2/2777:2779		No text annotation
homologous
J3_8C3A_007
NA
J3_4D67_0261/2/2417:2422,
1/2/2492:2496,
1/2/2513:2514		No text annotation
homologous
J3_8P9A_055
J3_31965.2
J3_4D67_0421/2/2427:2433,
1/2/2442:2456,
1/2/2476:2486		No text annotation
J3_4D67_0431/2/2523:2531,
1/2/2550:2552,
1/2/2734:2747		No text annotation
J3_4D67_0091/2/2526:2533,
1/2/2548:2552,
1/2/2734:2745		No text annotation
J3_4D67_0101/2/2552:2553,
1/2/2562:2566,
1/2/2733:2734		No text annotation
J3_4D67_0441/2/2575:2579,
1/2/2714:2715,
1/2/2719:2724		No text annotation
homologous
J3_8CRE_018
J3_12393.2
J3_4D67_0111/2/3905:3908,
1/2/4042:4047,
1/2/4127:4134		No text annotation
homologous
J3_5TBW_012
NA
J3_4D67_0311/2/4050:4065,
1/2/4079:4096,
1/2/4115:4124		No text annotation
J3_4D67_0121/2/4201:4203,
1/2/4227:4229,
1/2/4238:4243		No text annotation
homologous
J3_8C3A_010
NA
J3_4D67_0321/2/4201:4205,
1/2/4223:4229,
1/2/4238:4243		No text annotation
J3_4D67_0131/2/4423:4426,
1/2/4451:4453,
1/2/4467:4473		No text annotation
homologous
J3_5TBW_014
NA
J3_4D67_0331/2/4708:4713,
1/2/4834:4839,
1/2/4890:4906		No text annotation
J3_4D67_0141/2/4925:4927,
1/2/4941:4947,
1/2/5014:5017		No text annotation
geometric
J3_5TBW_069
NA
J3_4D67_0341/2/4925:4930,
1/2/4938:4947,
1/2/5014:5017		No text annotation
J3_4D67_0151/3/44:45,
1/3/58:64,
1/3/95:99		No text annotation
homologous
J3_8P4V_024
NA
J3_4D67_0161/4/8:15,
1/4/64:67,
1/4/108:111		No text annotation
J4_4D67_0101/2/192:198,
1/2/211:219,
1/2/223:225,
1/2/237:243		No text annotation
J4_4D67_0021/2/2342:2348,
1/2/2366:2368,
1/2/2801:2806,
1/2/3825:3826		No text annotation
J4_4D67_0031/2/2383:2387,
1/2/2411:2416,
1/2/2515:2516,
1/2/2754:2761		No text annotation
J4_4D67_0041/2/2386:2387,
1/2/2411:2416,
1/2/2515:2516,
1/2/2754:2760		No text annotation
J4_4D67_0111/2/2595:2596,
1/2/2614:2625,
1/2/2662:2675,
1/2/2695:2696		No text annotation
J4_4D67_0061/2/3603:3607,
1/2/3619:3623,
1/2/3659:3663,
1/2/3790:3795		No text annotation
homologous
J4_8P9A_017
J4_07509.2
J4_4D67_0071/2/3665:3667,
1/2/3721:3723,
1/2/3740:3749,
1/2/3783:3788		No text annotation
J4_4D67_0081/2/4191:4195,
1/2/4249:4253,
1/2/4277:4279,
1/2/4288:4290		No text annotation
homologous
J4_8P9A_019
J4_04930.6
J4_4D67_0091/2/4547:4552,
1/2/4578:4581,
1/2/4636:4638,
1/2/4672:4675		No text annotation
J5_4D67_0011/2/111:125,
1/2/143:157,
1/2/266:274,
1/2/295:301,
1/2/318:321		No text annotation
J5_4D67_0021/2/1315:1320,
1/2/1495:1498,
1/2/1637:1640,
1/2/2264:2266,
1/2/2322:2328		No text annotation
homologous
J5_8C3A_002
NA
J5_4D67_0031/2/2832:2840,
1/2/2864:2865,
1/2/3582:3583,
1/2/3587:3595,
1/2/3804:3806		No text annotation
homologous
J5_8P9A_013
J5_62523.6
J5_4D67_0051/2/3872:3879,
1/2/4352:4363,
1/2/4400:4412,
1/2/4489:4494,
1/2/4512:4517		No text annotation
J6_4D67_0031/2/1332:1335,
1/2/1364:1368,
1/2/1375:1379,
1/2/1398:1401,
1/2/1443:1445,
1/2/1478:1483		No text annotation
J6_4D67_0041/2/3889:3892,
1/2/4148:4151,
1/2/4164:4165,
1/2/4187:4190,
1/2/4291:4302,
1/2/4330:4341		No text annotation
J7_4D67_0011/2/1645:1652,
1/2/1661:1664,
1/2/1830:1833,
1/2/1857:1862,
1/2/1873:1877,
1/2/2055:2056,
1/2/2254:2259		No text annotation
J9_4D67_0021/2/19:27,
1/2/55:67,
1/2/74:78,
1/2/105:109,
1/2/323:335,
1/3/30:42,
1/3/101:106,
1/3/113:114,
1/3/136:138		No text annotation

Problematic loops

#loop idProblemSequence
J3_4D67_018No text annotation
J3_4D67_019No text annotation
J3_4D67_020No text annotation
J3_4D67_021No text annotation
J3_4D67_023No text annotation
J3_4D67_004No text annotation
J3_4D67_024No text annotation
J3_4D67_025No text annotation
J3_4D67_027No text annotation
J3_4D67_028No text annotation
J3_4D67_029No text annotation
J3_4D67_030No text annotation
J4_4D67_001No text annotation
J4_4D67_005No text annotation
J5_4D67_004No text annotation
J6_4D67_001No text annotation
J6_4D67_002No text annotation
J9_4D67_001No text annotation

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