HL_4D67_015

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUCGCACGAAAG

Length

12 nucleotides

Bulged bases

4D67|1|2|C|1347, 4D67|1|2|C|1349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|C|1343
4D67|1|2|U|1344
4D67|1|2|C|1345
4D67|1|2|G|1346
4D67|1|2|C|1347
4D67|1|2|A|1348
4D67|1|2|C|1349
4D67|1|2|G|1350
4D67|1|2|A|1351
4D67|1|2|A|1352
4D67|1|2|A|1353
4D67|1|2|G|1354

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S RIBOSOMAL PROTEIN L4

Chain L

60S RIBOSOMAL PROTEIN L13

Chain N

60S RIBOSOMAL PROTEIN L15

Chain Y

60S RIBOSOMAL PROTEIN L26