HL_4D67_020

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

4D67|1|2|A|1542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_020 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2827

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

4D67|1|2|G|1540
4D67|1|2|G|1541
4D67|1|2|A|1542
4D67|1|2|A|1543
4D67|1|2|A|1544
4D67|1|2|C|1545

Current chains

Chain 2

28S RRNA

Nearby chains