HL_4D67_025

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

4D67|1|2|G|1800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_025 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3033

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

4D67|1|2|C|1795
4D67|1|2|U|1796
4D67|1|2|G|1797
4D67|1|2|G|1798
4D67|1|2|C|1799
4D67|1|2|G|1800
4D67|1|2|U|1801
4D67|1|2|G|1802

Current chains

Chain 2

28S RRNA

Nearby chains

Chain D

60S RIBOSOMAL PROTEIN L5

Chain T

60S RIBOSOMAL PROTEIN L21

Chain b

60S RIBOSOMAL PROTEIN L29