HL_4D67_028

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UAUAGACAGCACUGCCGAA

Length

19 nucleotides

Bulged bases

4D67|1|2|A|1938

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|U|1935
4D67|1|2|A|1936
4D67|1|2|U|1937
4D67|1|2|A|1938
4D67|1|2|G|1939
4D67|1|2|A|1940
4D67|1|2|C|1941
4D67|1|2|A|1942
4D67|1|2|G|1943
4D67|1|2|C|1944
4D67|1|2|A|1945
4D67|1|2|C|1997
4D67|1|2|U|1998
4D67|1|2|G|1999
4D67|1|2|C|2000
4D67|1|2|C|2001
4D67|1|2|G|2002
4D67|1|2|A|2003
4D67|1|2|A|2004

Current chains

Chain 2

28S RRNA

Nearby chains

Chain S

60S RIBOSOMAL PROTEIN L18A

Chain m

UBIQUITIN-60S RIBOSOMAL PROTEIN L40