HL_4D67_041

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

4D67|1|2|C|2716

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_041 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.4717

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

4D67|1|2|C|2715
4D67|1|2|C|2716
4D67|1|2|U|2717
4D67|1|2|U|2718
4D67|1|2|G|2719

Current chains

Chain 2

28S RRNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN L8

Chain p

60S RIBOSOMAL PROTEIN L37A