HL_4D67_054

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GCCCGGCC

Length

8 nucleotides

Bulged bases

4D67|1|2|C|4105

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4D67|1|2|G|4102
4D67|1|2|C|4103
4D67|1|2|C|4104
4D67|1|2|C|4105
4D67|1|2|G|4106
4D67|1|2|G|4107
4D67|1|2|C|4108
4D67|1|2|C|4109

Current chains

Chain 2

28S RRNA

Nearby chains

Chain G

60S RIBOSOMAL PROTEIN L7A

Chain Z

60S RIBOSOMAL PROTEIN L27