HL_4D67_058

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_058 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1875

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

4D67|1|2|C|4230
4D67|1|2|A|4231
4D67|1|2|G|4232
4D67|1|2|A|4233
4D67|1|2|A|4234
4D67|1|2|G|4235
4D67|1|2|G|4236
4D67|1|2|G|4237

Current chains

Chain 2

28S RRNA

Nearby chains

Chain I

60S RIBOSOMAL PROTEIN L10

Chain T

60S RIBOSOMAL PROTEIN L21

Chain o

60S RIBOSOMAL PROTEIN L36A