HL_4D67_060
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUGAAAGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D67_060 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.3512
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_04259.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4D67|1|2|G|4280
4D67|1|2|U|4281
4D67|1|2|G|4282
4D67|1|2|A|4283
4D67|1|2|A|4284
4D67|1|2|A|4285
4D67|1|2|G|4286
4D67|1|2|C|4287
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain D
- 60S RIBOSOMAL PROTEIN L5
- Chain T
- 60S RIBOSOMAL PROTEIN L21
- Chain o
- 60S RIBOSOMAL PROTEIN L36A
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