3D structure

PDB id
4D67 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Experimental method
ELECTRON MICROSCOPY
Resolution
9 Å

Loop

Sequence
GUGAAAGC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4D67_060 not in the Motif Atlas
Geometric match to HL_7A0S_056
Geometric discrepancy: 0.3512
The information below is about HL_7A0S_056
Detailed Annotation
GNRA with extra cWW
Broad Annotation
GNRA with extra cWW
Motif group
HL_04259.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

4D67|1|2|G|4280
4D67|1|2|U|4281
4D67|1|2|G|4282
4D67|1|2|A|4283
4D67|1|2|A|4284
4D67|1|2|A|4285
4D67|1|2|G|4286
4D67|1|2|C|4287

Current chains

Chain 2
28S RRNA

Nearby chains

Chain D
60S RIBOSOMAL PROTEIN L5
Chain T
60S RIBOSOMAL PROTEIN L21
Chain o
60S RIBOSOMAL PROTEIN L36A

Coloring options:


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