HL_4D67_070

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

4D67|1|2|U|4931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4D67_070 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1651

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

4D67|1|2|G|4930
4D67|1|2|U|4931
4D67|1|2|A|4932
4D67|1|2|G|4933
4D67|1|2|A|4934
4D67|1|2|C|4935
4D67|1|2|G|4936
4D67|1|2|A|4937
4D67|1|2|C|4938

Current chains

Chain 2

28S RRNA

Nearby chains

Chain B

60S RIBOSOMAL PROTEIN L3

Chain P

60S RIBOSOMAL PROTEIN L17

Chain d

60S RIBOSOMAL PROTEIN L31