HL_4D67_084
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CACUUG
- Length
- 6 nucleotides
- Bulged bases
- 4D67|1|3|U|110
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D67_084 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2993
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05426.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
4D67|1|3|C|107
4D67|1|3|A|108
4D67|1|3|C|109
4D67|1|3|U|110
4D67|1|3|U|111
4D67|1|3|G|112
Current chains
- Chain 3
- 5.8S RRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S RIBOSOMAL PROTEIN L23A
- Chain j
- 60S RIBOSOMAL PROTEIN L37
- Chain l
- 60S RIBOSOMAL PROTEIN L39
Coloring options: