HL_4DR1_006

3D structure

PDB id

4DR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the apo 30S ribosomal subunit from Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4DR1|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR1_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0897

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4DR1|1|A|G|259
4DR1|1|A|G|260
4DR1|1|A|U|261
4DR1|1|A|A|262
4DR1|1|A|A|263
4DR1|1|A|U|264
4DR1|1|A|G|265
4DR1|1|A|G|266
4DR1|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20