HL_4DR3_006

3D structure

PDB id

4DR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4DR3|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR3_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0544

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4DR3|1|A|G|259
4DR3|1|A|G|260
4DR3|1|A|U|261
4DR3|1|A|A|262
4DR3|1|A|A|263
4DR3|1|A|U|264
4DR3|1|A|G|265
4DR3|1|A|G|266
4DR3|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20