HL_4DR4_006

3D structure

PDB id

4DR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4DR4|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DR4_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0983

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4DR4|1|A|G|259
4DR4|1|A|G|260
4DR4|1|A|U|261
4DR4|1|A|A|262
4DR4|1|A|A|263
4DR4|1|A|U|264
4DR4|1|A|G|265
4DR4|1|A|G|266
4DR4|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20