3D structure

PDB id
4DR7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
Experimental method
X-RAY DIFFRACTION
Resolution
3.75 Å

Loop

Sequence
GGUAAUGGC
Length
9 nucleotides
Bulged bases
4DR7|1|A|G|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4DR7_006 not in the Motif Atlas
Homologous match to HL_4LFB_006
Geometric discrepancy: 0.1123
The information below is about HL_4LFB_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_84299.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

4DR7|1|A|G|259
4DR7|1|A|G|260
4DR7|1|A|U|261
4DR7|1|A|A|262
4DR7|1|A|A|263
4DR7|1|A|U|264
4DR7|1|A|G|265
4DR7|1|A|G|266
4DR7|1|A|C|267

Current chains

Chain A
16S rRNA

Nearby chains

Chain Q
30S ribosomal protein S17
Chain T
30S ribosomal protein S20

Coloring options:


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