HL_4DR7_033

3D structure

PDB id

4DR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CCUGGAAAG

Length

9 nucleotides

Bulged bases

4DR7|1|W|U|33

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59710.1

Basepair signature

cWW-bif-R-R-R-R-R

Number of instances in this motif group

32

Unit IDs

4DR7|1|W|C|31
4DR7|1|W|C|32
4DR7|1|W|U|33
4DR7|1|W|G|34
4DR7|1|W|G|35
4DR7|1|W|A|36
4DR7|1|W|A|37
4DR7|1|W|A|38
4DR7|1|W|G|39

Current chains

Chain W

5'-R(*GP*CP*CP*UP*GP*GP*AP*AP*AP*GP*(PSU))-3'

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L

30S ribosomal protein S12

Chain V

5'-R(*UP*UP*UP*U)-3'