Motif HL_59710.1 Version HL_59710.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4P5J_002 | 4P5J | 0.6091 | 0 | Turnip yellow mosaic virus TLS RNA anticodon loop | A | tRNA-like 3' UTR element | C | 25 | U | 26 | C | 27 | G | 28 | A | 29 | C | 30 | A | 31 | C | 32 | G | 33 | cWW | ||
| 2 | HL_4DR7_033 | 4DR7 | 0.5717 | 0 | W | RNA (11-mer) | C | 31 | C | 32 | U | 33 | G | 34 | G | 35 | A | 36 | A | 37 | A | 38 | G | 39 | ncWW | |||
| 3 | HL_4W29_037 | 4W29 | 0.4630 | 0 | AX | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | A | 35 | C | 36 | A | 37 | A | 38 | G | 39 | cWW | tSHa | ||
| 4 | HL_2AKE_005 | 2AKE | 0.3943 | 0 | tRNA anticodon loop | B | tRNA | A | 31||||7_556 | C | 32||||7_556 | U | 33||||7_556 | C | 34||||7_556 | C | 35||||7_556 | A | 36||||7_556 | G | 37||||7_556 | A | 38||||7_556 | U | 39||||7_556 | cWW | ||
| 5 | HL_2AKE_002 | 2AKE | 0.3943 | 0 | tRNA anticodon loop | B | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | C | 35 | A | 36 | G | 37 | A | 38 | U | 39 | cWW | ||
| 6 | HL_2ZNI_002 | 2ZNI | 0.3548 | 0 | C | bacterial tRNA | A | 31 | C | 32 | U | 33 | C | 34 | U | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | cWW | ||
| 7 | HL_3WFS_002 | 3WFS | 0.4066 | 0 | tRNA anticodon loop | A | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | ncWW | ncWW | |
| 8 | HL_1U0B_002 | 1U0B | 0.2901 | 0 | tRNA anticodon loop | A | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 9 | HL_4YCO_002 | 4YCO | 0.2512 | 0 | tRNA anticodon loop | D | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 10 | HL_3TUP_002 | 3TUP | 0.3334 | 0 | tRNA anticodon loop | T | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 11 | HL_4V9I_039 | 4V9I | 0.2679 | 0 | tRNA anticodon loop | AY | tRNA | U | 31 | C | 32 | U | 33 | C | 34 | G | 35 | A | 36 | A | 37 | A | 38 | A | 39 | cWW | ||
| 12 | HL_5IBB_210 | 5IBB | 0.2411 | 0 | tRNA anticodon loop | 1L | tRNA | C | 31 | C | 32 | U | 33 | U | 34 | A | 35 | C | 36 | A | 37 | A | 38 | G | 39 | cWW | ncWW | |
| 13 | HL_4WT8_216 | 4WT8 | 0.2321 | 0 | tRNA anticodon loop | D4 | tRNA | G | 32 | C | 33 | U | 34 | C | 35 | A | 36 | U | 37 | A | 38 | A | 39 | C | 40 | cWW | ||
| 14 | HL_4V9Q_214 | 4V9Q | 0.2029 | 0 | tRNA anticodon loop | DV | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 15 | HL_4TUE_034 | 4TUE | 0.1719 | 0 | tRNA anticodon loop | QV | tRNA | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | ||
| 16 | HL_4V6D_137 | 4V6D | 0.2138 | 0 | CV | P-site tRNA ASL fragment | G | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | C | 39 | cWW | |||
| 17 | HL_2AZX_005 | 2AZX | 0.0000 | 0 | tRNA anticodon loop | D | 72-MER | A | 531 | C | 532 | U | 533 | C | 534 | C | 535 | A | 536 | G | 537 | A | 538 | U | 539 | cWW | ||
| 18 | HL_2AZX_008 | 2AZX | 0.0000 | 0 | tRNA anticodon loop | D | 72-MER | A | 531||||6_555 | C | 532||||6_555 | U | 533||||6_555 | C | 534||||6_555 | C | 535||||6_555 | A | 536||||6_555 | G | 537||||6_555 | A | 538||||6_555 | U | 539||||6_555 | cWW | ||
| 19 | HL_4P95_002 | 4P95 | 0.2956 | 0 | Lariat-capping (LC) ribozyme DP2.1 hairpin | A | RNA (192-MER) | G | 241 | C | 242 | U | 243 | A | 244 | A | 245 | U | 246 | C | 247 | A | 248 | C | 249 | cWW | ||
| 20 | HL_4P8Z_001 | 4P8Z | 0.3137 | 0 | A | Lariat capping ribozyme | G | 23 | C | 24 | U | 25 | A | 26 | A | 27 | U | 28 | C | 29 | A | 30 | C | 31 | cWW | ncWW | ||
| 21 | HL_4V9K_034 | 4V9K | 0.3264 | 0 | tRNA anticodon loop | AW | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 35 | U | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | |
| 22 | HL_4V4J_002 | 4V4J | 0.3523 | 0 | 2 | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ||
| 23 | HL_4V90_033 | 4V90 | 0.3975 | 0 | tRNA anticodon loop | AV | tRNA | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ||
| 24 | HL_3W3S_006 | 3W3S | 0.3633 | 0 | tRNA anticodon loop | B | Selenocysteine transfer RNA | A | 31||||43_455 | C | 32||||43_455 | U | 33||||43_455 | U | 34||||43_455 | C | 35||||43_455 | A | 36||||43_455 | A | 37||||43_455 | A | 38||||43_455 | U | 39||||43_455 | cWW | ncWW | |
| 25 | HL_3W3S_002 | 3W3S | 0.3633 | 0 | tRNA anticodon loop | B | Selenocysteine transfer RNA | A | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | |
| 26 | HL_1N78_002 | 1N78 | 0.3312 | 0 | tRNA anticodon loop | C | tRNA(Glu) | C | 531 | C | 532 | U | 533 | C | 534 | U | 535 | C | 536 | A | 537 | A | 538 | G | 539 | cWW | ncWW | |
| 27 | HL_5T83_002 | 5T83 | 0.3737 | 0 | Guanidine riboswitch aptamer P2 hairpin | A | Guanidine-I riboswitch | U | 56 | U | 57 | U | 58 | C | 59 | A | 60 | C | 61 | A | 62 | A | 63 | A | 64 | cWW | ntSHa | |
| 28 | HL_1J2B_001 | 1J2B | 0.4700 | 0 | C | tRNA(Val) | C | 932 | C | 933 | U | 934 | U | 935 | A | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | cWW | ||
| 29 | HL_1J1U_002 | 1J1U | 0.5705 | 0 | tRNA anticodon loop | B | tRNA(Tyr) | A | 532 | C | 533 | U | 534 | G | 535 | U | 536 | A | 537 | G | 538 | A | 539 | U | 540 | cWW | ncWW | |
| 30 | HL_1J1U_005 | 1J1U | 0.5705 | 0 | tRNA anticodon loop | B | tRNA(Tyr) | A | 532||||4_556 | C | 533||||4_556 | U | 534||||4_556 | G | 535||||4_556 | U | 536||||4_556 | A | 537||||4_556 | G | 538||||4_556 | A | 539||||4_556 | U | 540||||4_556 | cWW | ncWW | |
| 31 | HL_3RG5_010 | 3RG5 | 0.7080 | 0 | B | Selenocysteine transfer RNA | G | 31||||1_556 | C | 32||||1_556 | U | 33||||1_556 | U | 34||||1_556 | C | 35||||1_556 | A | 36||||1_556 | A | 37||||1_556 | A | 38||||1_556 | C | 39||||1_556 | cWW | cWW | ||
| 32 | HL_3RG5_006 | 3RG5 | 0.7080 | 0 | B | Selenocysteine transfer RNA | G | 31 | C | 32 | U | 33 | U | 34 | C | 35 | A | 36 | A | 37 | A | 38 | C | 39 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUCCAGAU | 4 |
| GCUCAUAAC | 4 |
| ACUGAAAAU | 3 |
| CCUUACAAG | 2 |
| AUUGAAAAU | 2 |
| GCUAAUCAC | 2 |
| ACUUCAAAU | 2 |
| ACUGUAGAU | 2 |
| GCUUCAAAC | 2 |
| CUCGACACG | 1 |
| CCUGGAAAG | 1 |
| ACUCUAAAU | 1 |
| AUUGCAAAU | 1 |
| UCUCGAAAA | 1 |
| ACUCAUAAU | 1 |
| CCUCUCAAG | 1 |
| UUUCACAAA | 1 |
| CCUUACGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAUAA | 5 |
| CUCCAGA | 4 |
| CUUCAAA | 4 |
| CUGAAAA | 3 |
| CUUACAA | 2 |
| UUGAAAA | 2 |
| CUAAUCA | 2 |
| CUGUAGA | 2 |
| UCGACAC | 1 |
| CUGGAAA | 1 |
| CUCUAAA | 1 |
| UUGCAAA | 1 |
| CUCGAAA | 1 |
| CUCUCAA | 1 |
| UUCACAA | 1 |
| CUUACGA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tRNA anticodon loop (20)
- Turnip yellow mosaic virus TLS RNA anticodon loop (1)
- Lariat-capping (LC) ribozyme DP2.1 hairpin (1)
- Guanidine riboswitch aptamer P2 hairpin (1)
- Basepair signature
- cWW-bif-R-R-R-R-R
- Heat map statistics
- Min 0.12 | Avg 0.48 | Max 0.94
Coloring options: