HL_4DUY_005

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GCUUUGC

Length

7 nucleotides

Bulged bases

4DUY|1|A|U|202, 4DUY|1|A|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DUY_005 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.3441

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

4DUY|1|A|G|200
4DUY|1|A|C|201
4DUY|1|A|U|202
4DUY|1|A|U|203
4DUY|1|A|U|204
4DUY|1|A|G|216
4DUY|1|A|C|217

Current chains

Chain A

16S rRNA

Nearby chains