HL_4DUY_006

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4DUY|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DUY_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0643

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4DUY|1|A|G|259
4DUY|1|A|G|260
4DUY|1|A|U|261
4DUY|1|A|A|262
4DUY|1|A|A|263
4DUY|1|A|U|264
4DUY|1|A|G|265
4DUY|1|A|G|266
4DUY|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

ribosomal protein S17

Chain T

ribosomal protein S20