HL_4DUZ_014

3D structure

PDB id

4DUZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DUZ_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.112

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4DUZ|1|A|G|617
4DUZ|1|A|C|618
4DUZ|1|A|U|619
4DUZ|1|A|C|620
4DUZ|1|A|A|621
4DUZ|1|A|A|622
4DUZ|1|A|C|623

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain P

ribosomal protein S16