HL_4DV0_007

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV0_007 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.0853

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4DV0|1|A|U|296
4DV0|1|A|G|297
4DV0|1|A|A|298
4DV0|1|A|G|299
4DV0|1|A|A|300
4DV0|1|A|G|301

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain E

ribosomal protein S5

Chain L

ribosomal protein S12

Chain Q

ribosomal protein S17