HL_4DV1_002

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GUUUUAC

Length

7 nucleotides

Bulged bases

4DV1|1|A|U|81

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV1_002 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.24

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4DV1|1|A|G|80
4DV1|1|A|U|81
4DV1|1|A|U|82
4DV1|1|A|U|83
4DV1|1|A|U|84
4DV1|1|A|A|88
4DV1|1|A|C|89

Current chains

Chain A

16S rRNA

Nearby chains