Motif HL_97725.1 Version HL_97725.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7YSE_002 | 7YSE | 0.5925 | 1 | Pseudoknot geometry | E | tRNA | U | 32 | G | 34 | C | 35 | C | 36 | A | 37 | A | 38 | cWW |
| 2 | HL_8K1E_001 | 8K1E | 0.3770 | 1 | A | MALAT1-associated small cytoplasmic RNA/MEN beta RNA | G | 23 | A | 25 | C | 26 | G | 27 | G | 28 | C | 29 | cWW | |
| 3 | HL_4GXY_003 | 4GXY | 0.2734 | 1 | Pseudoknot geometry | A | Adenosylcobalamin riboswitch | G | 65 | C | 67 | C | 68 | C | 69 | G | 70 | C | 71 | cWW |
| 4 | HL_9LKV_002 | 9LKV | 0.1518 | 1 | X | RNA (73-MER) | G | 35 | A | 37 | A | 38 | U | 39 | A | 40 | C | 41 | cWW | |
| 5 | HL_8KEB_002 | 8KEB | 0.0000 | 1 | A | RNA (72-MER) | G | 34 | A | 36 | A | 37 | U | 38 | A | 39 | C | 40 | cWW | |
| 6 | HL_9UW0_002 | 9UW0 | 0.1378 | 1 | X | RNA (65-MER) | G | 35 | A | 37 | A | 38 | U | 39 | A | 40 | C | 41 | cWW | |
| 7 | HL_6JXM_002 | 6JXM | 0.4494 | 2 | tRNA anticodon loop | B | tRNA | G | 41 | A | 44 | A | 45 | A | 46 | A | 47 | C | 48 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAUAC | 3 |
| UUGCCAA | 1 |
| GCACGGC | 1 |
| GUCCCGC | 1 |
| GCUAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAUA | 3 |
| UGCCA | 1 |
| CACGG | 1 |
| UCCCG | 1 |
| CUAAAA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Pseudoknot geometry (2)
- tRNA anticodon loop (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.36 | Max 0.64
Coloring options: