HL_4DV1_006

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4DV1|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV1_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1065

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4DV1|1|A|G|259
4DV1|1|A|G|260
4DV1|1|A|U|261
4DV1|1|A|A|262
4DV1|1|A|A|263
4DV1|1|A|U|264
4DV1|1|A|G|265
4DV1|1|A|G|266
4DV1|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

ribosomal protein S17

Chain T

ribosomal protein S20