HL_4DV1_011

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4DV1|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4DV1_011 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3765

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4DV1|1|A|C|418
4DV1|1|A|C|419
4DV1|1|A|U|420
4DV1|1|A|U|421
4DV1|1|A|C|422
4DV1|1|A|G|423
4DV1|1|A|G|424
4DV1|1|A|G|425

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

ribosomal protein S3

Chain D

ribosomal protein S4